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Repository data_manager_ncbi_fcs_gx_database_downloader
Name: data_manager_ncbi_fcs_gx_database_downloader
Owner: iuc
Synopsis: FCS-GX detects contamination from foreign organisms in genome sequences using the genome cross-species aligner (GX).
FCS-GX classifies sequences as contaminant when their taxonomic assignment is different from the user provided taxonomic identifier. A contamination summary provides an overview of observed contaminant divisions, counts, and total sizes, and an action report provides details and recommended actions for each problematic sequence.
Content homepage: https://github.com/ncbi/fcs-gx
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_ncbi_fcs_gx_database_downloader
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_ncbi_fcs_gx_database_downloader/35cef758050c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_ncbi_fcs_gx_database_downloader
Type: unrestricted
Revision: 1:35cef758050c
This revision can be installed: True
Times cloned / installed: 105

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Downoad the NCBI FCS GX database 0.5.4+galaxy0 21.05

Data Managers
Name Version Data Tables
data_manager_ncbi_fcs_gx_database_downloader 0.0.1 ncbi_fcs_gx_databases_ext, ncbi_fcs_gx_divisions

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache