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Repository winnowmap
Name: winnowmap
Owner: iuc
Synopsis: A long-read mapping tool optimized for mapping ONT and PacBio reads to repetitive reference sequences.
Winnowmap is a novel weighted-minimizer sampling algorithm. 
A unique feature is that it performs minimizer sampling while 
considering a weight for each k-mer; i.e. the higher the 
weight of a k-mer, the more likely it is to be selected. 
By down-weighting frequently occurring k-mers, we are able 
to meet both objectives: (i) avoid excessive false-positive 
matches and (ii) maintain the minimizer match guarantee.
Content homepage: https://github.com/marbl/Winnowmap
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/winnowmap
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/winnowmap/35ea4a8b1ea6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/winnowmap
Type: unrestricted
Revision: 2:35ea4a8b1ea6
This revision can be installed: True
Times cloned / installed: 221

Contents of this repository

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Name Description Version Minimum Galaxy Version
a mapping tool optimized for repetitive sequences 2.03+galaxy1 20.05

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data