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Repository ewastools

Name: ewastools

Owner: kpbioteam

Synopsis: Infinium Human Methylation BeadChip Analysis

Detailed description:

EWAS Tools Suite includes raw intensity data loading .idat preprocessing, optional normalisation of the data, quality control with additional sample check. It gives the user the opportunity to perform any of these preparation and data cleaning steps, including the next highly recommended genetic variation annotation step resulting in single nucleotide polymorphism identification and removal by simply running the tools. Finally, the dataset generated through all of these steps can be used to hunt find differentially-methylated positions DMP and regions DMR with respect to a phenotype co-variate.

Content homepage: https://bioconductor.org/packages/release/bioc/html/minfi.html

Development repository: https://github.com/kpbioteam/ewas_galaxy

Link to this repository: https://toolshed.g2.bx.psu.edu/view/kpbioteam/ewastools/369fef559cfc

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/kpbioteam/ewastools

Type: unrestricted

Revision: 82:369fef559cfc

This revision can be installed: True

Times cloned / installed: 779

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Infinium Human Methylation BeadChip View tool metadata	Determines differentially methylated regions and positions from Infinium Methylation Assays	2.1.0	16.01