Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository tbprofiler
Name: tbprofiler
Owner: iuc
Synopsis: Processes M. tuberculosis sequence data to infer strain type and identify known drug resistance markers.
TB-Profiler aligns reads to the H37Rv reference using bowtie2, BWA-MEM, BWA-MEM2 or minimap2 and then calls 
variants (by default using freebayes). These variants are then compared to a drug-resistance database to
predict drug resistance. For Illumina data the number of reads supporting the drug resistance variant
is also reported.
Content homepage: https://github.com/jodyphelan/TBProfiler
Development repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/37213cf56392
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler
Type: unrestricted
Revision: 10:37213cf56392
This revision can be installed: True
Times cloned / installed: 1077

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Infer strain types and drug resistance markers from sequences 3.0.6+galaxy0 21.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis