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Repository cooc_mutbamscan
Name: cooc_mutbamscan
Owner: iuc
Synopsis: Wrapper for the Cojac suite: Cojac: mutbamscan
Cojac is a set of tools to analyse co-occurrence of mutations on amplicons. It has been designed to scan for multiple SARS-CoV-2 variants in wastewater samples.
Content homepage: https://github.com/cbg-ethz/cojac
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/cooc_mutbamscan/373c1735d31f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cooc_mutbamscan
Type: unrestricted
Revision: 0:373c1735d31f
This revision can be installed: True
Times cloned / installed: 254

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
scan an alignment file for mutation co-occurrences 0.2+galaxy0 21.01

Categories
Metagenomics - Tools enabling the study of metagenomes
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis