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Repository rpcompletion
Name: rpcompletion
Owner: tduigou
Synopsis: Galaxy tool that reads the output of RP2paths, parses it, and generates SBML for each complete (cofactors) and unique pathway.
Completes mono-component reactions output by RetroPath2.0 with the appropriate cofactors. Creates sub-paths when multiple reaction rules are associated with a single reaction. Input is a single pathways file produced by RP2Paths (https://github.com/brsynth/rp2paths). It stands on rrCache which store pre-computed data. Source code may be found at the following location: https://github.com/brsynth/rptools/blob/master/rptools/rpcompletion/README.md
Development repository: https://github.com/brsynth/synbiocad-galaxy-wrappers/tree/master/rpCompletion
Link to this repository: https://toolshed.g2.bx.psu.edu/view/tduigou/rpcompletion/37bed74bbd44
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/tduigou/rpcompletion
Type: unrestricted
Revision: 5:37bed74bbd44
This revision can be installed: True
Times cloned / installed: 216

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Name Description Version Minimum Galaxy Version
Completes mono-component reactions output by RetroPath2.0 with the appropriate cofactors 6.0.1+galaxy0 21.09

Categories
Synthetic Biology - Tools for synthetic biology