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Repository seq_select_by_id

Name: seq_select_by_id

Owner: peterjc

Synopsis: Select sequences by ID

Detailed description:

Select FASTA, FASTQ, QUAL or SFF sequences using a list of IDs in a tabular file.

A column of a tabular file specifies a list of desired sequences which will be extracted
from the given sequence file. The order comes from the tabular file, so in order
to do this the sequence file is first indexed.

This tool is a short Python script (using Biopython and Galaxy library functions).
It requires Biopython to be installed.

NOTE: I have a similar tool "Filter sequences by ID" which does a similar but less
demanding job, but preserves the order of the sequence file.

Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id

Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id

Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id/3b0a14722175

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/seq_select_by_id

Type: unrestricted

Revision: 9:3b0a14722175

This revision can be installed: True

Times cloned / installed: 3480

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
biopython	1.67	package

Tool dependencies - repository tools require handling of these dependencies

Name

Version

Type

biopython

1.67

package

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Select sequences by ID View tool metadata	from a tabular file	0.0.14	16.01

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

from a tabular file

0.0.14

16.01