| Genotyping by Sequencing is an emerging technology for cost effective variant discovery and genotyping. However, current analysis tools do not fulfill all experimental design and analysis needs.
GBSX is a package of tools to first aid in experimental design, including choice of enzymes and barcode design. Secondly, it provides a first analysis step to demultiplex samples using in-line barcodes, providing fastq files that can easily be plugged into existing variant analysis pipelines. |
hg clone https://toolshed.g2.bx.psu.edu/repos/koen/gbsx
| Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required) |
| Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required) |
| Name | Version | Type | |
|---|---|---|---|
| GBSX | 1.2 | package | |
| bioperl | 1.6.922 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| simulates a digest for the selection of the best enzymes | 1.1.5 | any | |
| demultiplexes inline barcodes from GBS and RAD experiments | 1.1.5 | any | |
| creates inline barcodes for a given enzyme | 1.1.5 | any | |