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Repository variant_analyzer

Name: variant_analyzer

Owner: iuc

Synopsis: Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data

Detailed description:

Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/variant_analyzer

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/variant_analyzer/3f1dbd2c59bf

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer

Type: unrestricted

Revision: 2:3f1dbd2c59bf

This revision can be installed: True

Times cloned / installed: 362

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Call specific mutations in reads: View tool metadata	Looks for reads with mutation at known positions and calculates frequencies and stats.	2.0.0	19.01
DCS mutations to SSCS stats: View tool metadata	Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies	2.0.0	19.01
DCS mutations to tags/reads: View tool metadata	Extracts all tags that carry a mutation in the duplex consensus sequence (DCS)	2.0.0	19.01