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Repository adapter_removal

Name: adapter_removal

Owner: iuc

Synopsis: Removes residual adapter sequences from single-end (SE) or paired-end (PE) FASTQ reads.

Detailed description:

Removes residual adapter sequences from single-end (SE) or paired-end (PE) FASTQ reads, optionally trimming
Ns and low qualities bases and/or collapsing overlapping paired-end mates into one read. Low quality reads
are filtered based on the resulting length and the number of ambigious nucleotides ('N') present following
trimming. These operations may be combined with simultaneous demultiplexing using 5' barcode sequences.
Alternatively, AdapterRemoval may attempt to reconstruct a consensus adapter sequences from paired-end data,
in order to allow the identification of the adapter sequences originally used.

Content homepage: https://github.com/MikkelSchubert/adapterremoval

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/adapter_removal/

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/adapter_removal/40874f772ea1

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/adapter_removal

Type: unrestricted

Revision: 1:40874f772ea1

This revision can be installed: True

Times cloned / installed: 193