The Pretext (Paired REad TEXTure) suite include two tools: PretextMap and PretextSnapshot. PretextMap allows to convert SAM/BAM files into genome contacts maps. On the other hand, PretextSnapShot is a image generator for Pretext contact maps. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pretext_graph