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Repository
bedtools
Name:
bedtools
Owner:
aaronquinlan
Synopsis:
Flexible tools for genome arithmetic and NGS analysis.
Link to this repository:
https://toolshed.g2.bx.psu.edu/view/aaronquinlan/bedtools/41bba3e648d1
Clone this repository:
hg clone
https://toolshed.g2.bx.psu.edu/repos/aaronquinlan/bedtools
Type:
unrestricted
Revision:
1:41bba3e648d1
This revision can be installed:
True
Times cloned / installed:
1907
Contents of this repository
Valid tools
- click the name to preview the tool and use the pop-up menu to inspect all metadata
Name
Description
Version
Minimum Galaxy Version
Intersect BAM alignments with intervals in another files
View tool metadata
0.1.0
any
Intersect multiple sorted BED files
View tool metadata
0.1.0
any
Create a histogram of genome coverage
View tool metadata
0.1.0
any
Create a BedGraph of genome coverage
View tool metadata
0.1.0
any
Count intervals in one file overlapping intervals in another file
View tool metadata
0.1.0
any
Convert from BAM to BED
View tool metadata
0.1.0
any
Merge BedGraph files
View tool metadata
0.1.0
any
Categories
Convert Formats
- Tools for converting data formats
Genomic Interval Operations
- Tools for operating on genomic intervals
SAM
- Tools for manipulating alignments in the SAM format
Sequence Analysis
- Tools for performing Protein and DNA/RNA analysis