| This tool takes an extended (12 column) BED input file that has been processed by the Galaxy tool "Extract Genomic DNA" to add a 13th column with the transcript sequence. It generates a peptide fasta file with the 3-frame translations of the spliced sequence defined by each entry in the input BED file. It can also generate a bed file that defines the mapping of the translations to the reference genome. The tool "Map peptides to a bed file" can use this output to map peptides iidentified from a Proteomics search back to the reference genome. |
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/translate_bed_sequences
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 3 frame translation of BED augmented with a sequence column | 0.2.0 | 16.01 | |