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Repository bismark
Name: bismark
Owner: bjoern-gruening
Synopsis: a flexible aligner and methylation caller for Bisulfite-Seq applications
a flexible aligner and methylation caller for Bisulfite-Seq applications
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bjoern-gruening/bismark/427fb56f2e41
Type: unrestricted
Revision: 4:427fb56f2e41
This revision can be installed: True
Times cloned / installed: 56
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bowtie 0.12.8 package
bowtie2 2.0.0-beta7 package
SCRIPT_PATH set_environment

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
bisulfite mapper (bowtie2) 0.7.7.2 any
bisulfite mapper (bowtie) 0.7.7.3 any
methylation extractor 0.7.7.2 any

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data