| Checkout Bitbucket (https://bitbucket.org/galaxyp/galaxyp-toolshed-openms) for more information. |
| Repository proteomics_datatypes revision f74290b136fc owned by iracooke |
| Repository openms_app revision 34582591780a owned by galaxyp |
| Repository myrimatch_app revision fd7de0c507a1 owned by galaxyp |
| Name | Version | Type | |
|---|---|---|---|
| OpenMs | 1.10.0 | package | |
| myrimatch | 2.1.131 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 0.1.0 | any | ||
| 0.1.0 | any | ||
| 0.1.0 | any | ||
| Extracts and normalizes iTRAQ/TMT information from an MS experiment. | 0.1.0 | any | |
| Refreshes the protein references for all peptide hits from a idXML file. | 0.1.0 | any | |
| Assembles metabolite features from singleton mass traces. | 0.1.0 | any | |
| Utilize a filter to reduce the noise in an MS experiment. | 0.1.0 | any | |
| Extract portions of peak lists. | 0.1.0 | any | |
| 0.1 | any | ||
| Groups corresponding isotope-labeled features in a feature map. | 0.1.0 | any | |
| Shows basic information about the file, such as data ranges and file type. | 0.1.0 | any | |
| Corrects retention time distortions between maps by aligning spectra. | 0.1.0 | any | |
| Groups corresponding features from multiple maps using a QT clustering approach. | 0.1.0 | any | |
| Filters feature results by different criteria. | 0.1.0 | any | |
| Corrects retention time distortions between maps based on common peptide identifications. | 0.1.0 | any | |
| Converts between different MS file formats. | 0.1.0 | any | |
| Groups corresponding features from multiple maps. | 0.1.0 | any | |
| The feature detection application for quantitation. | 0.1.0 | any | |
| 0.1.0 | any | ||
| Converts identification engine file formats. | 0.1.0 | any | |
| Create decoy protein/peptide databases from normal ones. | 0.1.0 | any | |
| Filters consensus results by different criteria. | 0.1.0 | any | |
| Compute peptide and protein abundances from annotated feature/consensus maps. | 0.1.0 | any | |
| Tool to estimate the false discovery rate on peptide and protein level. | 0.1.0 | any | |
| The feature detection application for quantitation. | 0.1.0 | any | |
| 0.1.0 | any | ||
| Identifies peptide features in raw (i.e. profile) LC-MS data. | 0.1.0 | any | |
| 0.1.0 | any | ||
| Extracts one map of features from a consensus file. | 0.1.0 | any | |
| Tool to estimate the probability of peptide hits to be incorrectly assigned. | 0.1.0 | any | |
| 0.1.0 | any | ||
| Assigns protein/peptide identifications to features or consensus features. | 0.1.0 | any | |
| The feature detection application for quantitation (centroided). | 0.1.0 | any | |
| Filters protein identification engine results by different criteria. | 0.1.0 | any | |
| Wizard to apply multiple OpenMS signal preprocessing tools for peak lists. | 0.1 | any | |
| Executes the top-hat filter to remove the baseline of an MS experiment. | 0.1.0 | any | |
| Computes a consensus identification from peptide identification engines. | 0.1.0 | any | |
| precursor m/z correction on picked (centroided) high resolution data. | 0.1 | any | |
| Merges several idXML files into one idXML file. | 0.1.0 | any | |
| Computes a protein identification based on the number of identified peptides. | 0.1.0 | any | |
| Converts identification engine file formats. | 0.1.0 | any | |
| 0.1.0 | any | ||
| Performs a de novo peptide identification using the CompNovo engine. | 0.1.0 | any | |