Repository dotknot
Name: dotknot
Owner: bgruening
Synopsis: DotKnot is a heuristic method for pseudoknot prediction in a given RNA sequence
DotKnot extracts stem regions from the secondary structure probability dot plot calculated by RNAfold. Recursive H-type pseudoknots and intramolecular kissing hairpins are constructed and their presence in the sequence is verified. The detected pseudoknots can then be further analysed using bioinformatics or laboratory techniques.
Content homepage: http://dotknot.csse.uwa.edu.au/
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/rna/dotknot
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/dotknot/42d20ff5da1b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/dotknot
Type: unrestricted
Revision: 0:42d20ff5da1b
This revision can be installed: True
Times cloned / installed: 359
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_perl_5_18 revision 35f117d7396b owned by iuc (prior install required)
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
dotknot 1.3.1 package
vienna_rna 1.8.5 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
pseudoknot prediction in a given RNA sequence 1.3.1 any

Categories
RNA - Utilities for RNA
Proteomics - Tools enabling the study of proteins