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Repository rpthermo

Name: rpthermo

Owner: tduigou

Synopsis: Calculate the formation energy of chemical species and the Gibbs free energy of their reactions and pathways in an SBML

Detailed description:

Calculate the formation energy of chemical species either using an internal database or estimate it by decomposing them using the component contribution (https://gitlab.com/elad.noor/component-contribution) method. Thereafter this tool predicts the Gibbs free energy of reactions and of the whole heterologous pathway by combining the formation energy of each individual compound. Source code may be found at the following location: https://github.com/brsynth/rptools/tree/master/rptools/rpthermo

Development repository: https://github.com/brsynth/synbiocad-galaxy-wrappers/tree/master/rpThermo

Link to this repository: https://toolshed.g2.bx.psu.edu/view/tduigou/rpthermo/4525f388f3ac

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo

Type: unrestricted

Revision: 3:4525f388f3ac

This revision can be installed: True

Times cloned / installed: 101

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Thermo View tool metadata	Calculate the formation energy of chemical species and the Gibbs free energy of their reactions and pathways in an SBML	6.0.1	21.09