Repository ngsweep
Name: ngsweep
Owner: matnguyen
Synopsis: NGSweep, a preprocessing pipeline for bacterial Next-Generation Sequencing Data
This repository contains the in-house developed tools for NGSweep. These tools detect outliers from entire NGS datasets, and cleans the remaining samples. NGSweep removes contaminated reads from sequences in order to provide clean, high quality data for downstream analysis.
Development repository: https://github.com/WGS-TB/NGSweep
Link to this repository: https://toolshed.g2.bx.psu.edu/view/matnguyen/ngsweep/45533fb9d2f4
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/matnguyen/ngsweep
Type: unrestricted
Revision: 0:45533fb9d2f4
This revision can be installed: True
Times cloned / installed: 233

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
and output a list of outliers 0.1.0 16.01
by parsing Kraken reports 0.1.0 16.01
and output a list of outliers 0.1.0 16.01

Categories
Fastq Manipulation - Tools for manipulating fastq data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis