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Repository cnvkit_batch
Name: cnvkit_batch
Owner: iuc
Synopsis: Wrapper for CNVkit Batch.
CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
Content homepage: https://github.com/etal/cnvkit
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_batch/4653aeb60243
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_batch
Type: unrestricted
Revision: 1:4653aeb60243
This revision can be installed: True
Times cloned / installed: 176

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Run the CNVkit pipeline on one or more BAM files 0.9.10+galaxy0.1 21.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA