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Repository rpextractsink

Name: rpextractsink

Owner: tduigou

Synopsis: Generate the RetroPath2.0 sink file from an SBML input

Detailed description:

Sink refers to the collection of chemical species used by the restrosynthesis algorithm of RetroPath2.0 to finish metabolic route exploration. This tool uses an SBML file of the desired chassis organism, parses all the molecules within a specified compartment (example: cytoplasm, Golgi apparatus, nucleus, etc) and uses its MIRIAM annotation to find their InChI structures. Source code may be found at the following location: https://github.com/brsynth/rptools/tree/master/rptools/rpextractsink

Development repository: https://github.com/brsynth/synbiocad-galaxy-wrappers/tree/master/rpExtractSink

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/tduigou/rpextractsink/47bb93e7832b

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/tduigou/rpextractsink

Type: unrestricted

Revision: 3:47bb93e7832b

This revision can be installed: True

Times cloned / installed: 114

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Sink from SBML View tool metadata	Generate the RetroPath2.0 sink file from an SBML input	5.12.1	19.09