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Repository package_gemini_0_18_1

Name: package_gemini_0_18_1

Owner: iuc

Synopsis: Contains a tool dependency definition that downloads and compiles version 0.18.1 of GEMINI.

Detailed description:

GEMINI (GEnome MINIng) is designed to be a flexible framework for
exploring genetic variation in the context of the wealth of genome annotations available
for the human genome. By placing genetic variants, sample genotypes, and useful
genome annotations into an integrated database framework, GEMINI provides a simple,
flexible, yet very powerful system for exploring genetic variation for for disease
and population genetics.

Using the GEMINI framework begins by loading a VCF file into a database. Each variant
is automatically annotated by comparing it to several genome annotations from source
such as ENCODE tracks, UCSC tracks, OMIM, dbSNP, KEGG, and HPRD. All of this information
is stored in portable SQLite database that allows one to explore and interpret both
coding and non-coding variation using "off-the-shelf" tools or an enhanced SQL engine.

https://github.com/arq5x/gemini

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/package_gemini_0_18_1/49de32b47548

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_gemini_0_18_1

Type: tool_dependency_definition

Revision: 1:49de32b47548

This revision can be installed: True

Times cloned / installed: 948