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Repository ncbi_fcs_gx
Name: ncbi_fcs_gx
Owner: iuc
Synopsis: FCS-GX detects contamination from foreign organisms in genome sequences using the genome cross-species aligner (GX).
FCS-GX classifies sequences as contaminant when their taxonomic
assignment is different from the user provided taxonomic identifier. A
contamination summary provides an overview of observed contaminant
divisions, counts, and total sizes, and an action report provides
details and recommended actions for each problematic sequence.
Content homepage: https://github.com/ncbi/fcs-gx
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/ncbi_fcs_gx/49f8eae39606
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/ncbi_fcs_gx
Type: unrestricted
Revision: 1:49f8eae39606
This revision can be installed: True
Times cloned / installed: 121

Contents of this repository

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Name Description Version Minimum Galaxy Version
detects contamination from foreign organisms in genome sequences 0.5.0+galaxy0 21.05

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis