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Repository data_manager_kallisto_index_builder
Owner: iuc
Synopsis: Pre-generate indexes for kallisto
kallisto is a program for quantifying abundances of transcripts from RNA-Seq
data, or more generally of target sequences using high-throughput sequencing
reads. It is based on the novel idea of pseudoalignment for rapidly
determining the compatibility of reads with targets, without the need for
alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30
million human reads in less than 3 minutes on a Mac desktop computer using
only the read sequences and a transcriptome index that itself takes less than
10 minutes to build. Pseudoalignment of reads preserves the key information
needed for quantification, and kallisto is therefore not only fast, but also
as accurate as existing quantification tools. In fact, because the
pseudoalignment procedure is robust to errors in the reads, in many benchmarks
kallisto significantly outperforms existing tools.
Type: unrestricted
Revision: 2:4c7ebbad42cf
This revision can be installed: True
Times cloned / installed: 653

Contents of this repository

Name Description Version Minimum Galaxy Version
index builder 0.43.1 16.01

Name Version Data Tables
kallisto_index_builder 0.0.1 kallisto_indexes

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache