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Repository umi_tools_whitelist
Name: umi_tools_whitelist
Owner: iuc
Synopsis: Wrapper for the UMI-tools suite tool: UMI-tools whitelist
Extract UMI barcode from a read and add it to the read name, leaving
any sample barcode in place. Can deal with paired end reads and UMIs
split across the paired ends
Content homepage: https://github.com/CGATOxford/UMI-tools
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/umi_tools_whitelist/4c8a1c7d3608
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/umi_tools_whitelist
Type: unrestricted
Revision: 17:4c8a1c7d3608
This revision can be installed: True
Times cloned / installed: 754

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Extract cell barcodes from FASTQ files 1.1.5+galaxy0 21.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Transcriptomics - Tools for use in the study of Transcriptomics.