Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository groot
Name: groot
Owner: iuc
Synopsis: Wrapper for the GROOT tool suite: Groot
GROOT is a tool to type Antibiotic Resistance Genes (ARGs) in metagenomic samples (a.k.a. Resistome Profiling). 
It combines variation graph representation of gene sets with an LSH indexing scheme to allow for fast classification of metagenomic reads. 
Subsequent hierarchical local alignment of classified reads against graph traversals facilitates accurate reconstruction of full-length gene sequences using a simple scoring scheme.
Content homepage: https://github.com/will-rowe/groot
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/groot
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/groot/4d5cf5a423d5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/groot
Type: unrestricted
Revision: 3:4d5cf5a423d5
This revision can be installed: True
Times cloned / installed: 111

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
align reads to references and weight variation graphs and generate report 1.1.2+galaxy2 22.05

Categories
Metagenomics - Tools enabling the study of metagenomes