| Bowtie is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters to relatively long (e.g. mammalian) genomes. Bowtie 2 supports gapped, local, and paired-end alignment modes. Bowtie 2 outputs alignments in SAM format, enabling interoperation with a large number of other tools. |
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bowtie2
| Repository package_bowtie_2_2_4 revision 172979b6bf77 owned by devteam |
| Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam |
| Name | Version | Type | |
|---|---|---|---|
| bowtie2 | 2.2.4 | package | |
| samtools | 0.1.18 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| - map reads against reference genome | 0.6 | 16.01 | |