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Repository chewbbaca_allelecall
Name: chewbbaca_allelecall
Owner: iuc
Synopsis: Wrapper for ChewBBACA AlleleCall.
chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci. chewBBACA performs the schema creation and allele calls on complete or draft genomes.
Content homepage: https://github.com/B-UMMI/chewBBACA/tree/master
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/chewbbaca_allelecall/4fdabf147b39
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/chewbbaca_allelecall
Type: unrestricted
Revision: 1:4fdabf147b39
This revision can be installed: True
Times cloned / installed: 223

Contents of this repository

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Name Description Version Minimum Galaxy Version
Determine the allelic profiles of a set of genomes 3.3.3+galaxy1 22.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA