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Repository baredsc_1d
Name: baredsc_1d
Owner: iuc
Synopsis: Wrapper for baredSC: baredSC 1d tool.
baredSC for Bayesian Approach to Retreive Expression Distribution of Single Cel uses the raw counts and the total number of UMI for each cell. The PDF is approximated by a number of 1d or 2d gaussians provided by the user. The likelihood is estimated using the asumption that the raw counts follow a Poisson distribution of parameter equal to the proportion of mRNA for the gene in the cell multiplied by the total number of UMI identified in this cell.
Content homepage: https://github.com/lldelisle/baredSC
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/baredsc
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/baredsc_1d/4fff5a293013
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/baredsc_1d
Type: unrestricted
Revision: 1:4fff5a293013
This revision can be installed: True
Times cloned / installed: 418

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Compute distribution for a single gene 1.1.2+galaxy0 20.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
Visualization - Tools for visualizing data