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Repository pangolin

Name: pangolin

Owner: iuc

Synopsis: Pangolin assigns SARS-CoV-2 genome sequences their most likely lineages under the Pango nomenclature system.

Detailed description:

Pangolin uses a multinomial logistic regression model to classify SARS-CoV-2 query genomes into known Pango outbreak lineages. It reads genomes in FASTA format and produces lineage outputs in tabular format. The model was trained on curated results from a global maximum likelihood tree of 30,000 genomes made available by GISAID.

Content homepage: https://github.com/cov-lineages/pangolin

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/pangolin/514a786baaa9

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/pangolin

Type: unrestricted

Revision: 3:514a786baaa9

This revision can be installed: True

Times cloned / installed: 1878