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Repository samtools_coverage

Name: samtools_coverage

Owner: iuc

Synopsis: computes the depth at each position or region

Detailed description:

This tool uses the SAMtools toolkit to compute the depth at each position or region.

Content homepage: http://www.htslib.org/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_coverage

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/samtools_coverage/5160be5d088f

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/samtools_coverage

Type: unrestricted

Revision: 6:5160be5d088f

This revision can be installed: True

Times cloned / installed: 562

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Samtools coverage View tool metadata	Produces a histogram or table of coverage per chromosome	1.22+galaxy3	24.0

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Produces a histogram or table of coverage per chromosome

1.22+galaxy3

24.0