Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository hifiasm
Name: hifiasm
Owner: bgruening
Synopsis: A fast haplotype-resolved de novo assembler
Hifiasm is a fast haplotype-resolved de novo assembler
for PacBio Hifi reads. It can assemble a human genome
in several hours and works with the California redwood
genome, one of the most complex genomes sequenced so
far. Hifiasm can produce primary/alternate assemblies
of quality competitive with the best assemblers. It
also introduces a new graph binning algorithm and
achieves the best haplotype-resolved assembly given
trio data.
Content homepage: https://github.com/chhylp123/hifiasm
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/hifiasm
Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/hifiasm/5161f204ba63
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm
Type: unrestricted
Revision: 20:5161f204ba63
This revision can be installed: True
Times cloned / installed: 2522

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
haplotype-resolved de novo assembler for PacBio Hifi reads 0.20.0+galaxy0 16.01

Categories
Assembly - Tools for working with assemblies