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Repository tbprofiler
Name: tbprofiler
Owner: iuc
Synopsis: Processes M. tuberculosis sequence data to infer strain type and identify known drug resistance markers.
TB-Profiler aligns reads to the H37Rv reference using bowtie2, BWA-MEM, BWA-MEM2 or minimap2 and then calls 
variants (by default using freebayes). These variants are then compared to a drug-resistance database to
predict drug resistance. For Illumina data the number of reads supporting the drug resistance variant
is also reported.
Content homepage: https://github.com/jodyphelan/TBProfiler
Development repository: https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/51dd22484644
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tbprofiler
Type: unrestricted
Revision: 19:51dd22484644
This revision can be installed: True
Times cloned / installed: 1056

Contents of this repository

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Name Description Version Minimum Galaxy Version
Infer strain types and drug resistance markers from sequences 6.2.1+galaxy1 20.09

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis