Repository xcms_plot_raw
Name: xcms_plot_raw
Owner: workflow4metabolomics
Synopsis: Plot raw mzml file content with xcms
This suite provides tools from the XCMS package to visualize extracted ion chromatograms and raw data 
from a single mzML file. Users can define m/z and retention time (rt) values, and the suite plots data 
with a user-defined tolerance and rt range centered around the selected m/z and rt values.
The MsExperiment plot function creates a two-dimensional view of three-dimensional mass spectrometry data,
displaying peaks in the two-dimensional m/z versus retention time plane with intensity color-coding. The plot
is saved as a PNG file
Content homepage: https://github.com/sneumann/xcms
Development repository: https://github.com/workflow4metabolomics/tools-metabolomics/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/workflow4metabolomics/xcms_plot_raw/520448a32548
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/workflow4metabolomics/xcms_plot_raw
Type: unrestricted
Revision: 0:520448a32548
This revision can be installed: True
Times cloned / installed: 30

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Plot raw data filtered by m/z range and retention time (RT) range 4.0.0+galaxy0 21.09

Categories
Metabolomics - Tools for use in the study of Metabolomics