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Repository bam_to_bigwig
Name: bam_to_bigwig
Owner: brad-chapman
Synopsis: Generate BigWig coverage files from BAM files. Allows gapped reads to be split (useful for RNA-Seq).
Create a BigWig file of coverage data from a BAM file using BEDtools with a bedgraph intermediate. Produces BigWig files suitable for display at UCSC. Requires pysam, BEDtools and bedGraphToBigWig.
Content homepage: https://github.com/lparsons/galaxy_tools/tree/master/tools/bam_to_bigwig
Development repository: https://github.com/lparsons/galaxy_tools/tree/master/tools/bam_to_bigwig
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/brad-chapman/bam_to_bigwig/52bcd04ee0d6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/brad-chapman/bam_to_bigwig
Type: unrestricted
Revision: 5:52bcd04ee0d6
This revision can be installed: True
Times cloned / installed: 1372

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Calculates coverage from a BAM alignment file 0.1.1 any

Categories
Convert Formats - Tools for converting data formats
SAM - Tools for manipulating alignments in the SAM format
Visualization - Tools for visualizing data

Rating
2