Galaxy |

Repository manta

Name: manta

Owner: artbio

Synopsis: Structural variant and indel caller for mapped sequencing data

Detailed description:

This tool takes a sorted bam alignment file from paired-end sequencing reads
and calls structural variants (SVs) and indels. It discovers large-scale SVs,
medium-sized indels and large insertions in a very fast analysis.

Content homepage: http://artbio.fr

Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/manta

Link to this repository: https://toolshed.g2.bx.psu.edu/view/artbio/manta/555971edd46e

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/manta

Type: unrestricted

Revision: 7:555971edd46e

This revision can be installed: True

Times cloned / installed: 262

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Manta View tool metadata	Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.	1.6+galaxy9	20.05

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.

1.6+galaxy9

20.05