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Repository align_and_estimate_abundance

Name: align_and_estimate_abundance

Owner: anmoljh

Synopsis: align_and_estimate_abundance.pl utility from trinitynraseq package

Link to this repository: https://toolshed.g2.bx.psu.edu/view/anmoljh/align_and_estimate_abundance/5587e12bd075

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/anmoljh/align_and_estimate_abundance

Type: unrestricted

Revision: 3:5587e12bd075

This revision can be installed: True

Times cloned / installed: 286

Dependencies of this repository

Repository package_ncurses_5_9 revision 93ce0192b9db owned by anmoljh (prior install required)

Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)

Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam (prior install required)

Repository package_bowtie_2_2_5 revision 30bd7eaeddbf owned by iuc (prior install required)

Repository package_express_1_5_1 revision 93017e8743e5 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
bowtie	0.12.7	package
bowtie2	2.2.5	package
eXpress	1.5.1	package
samtools	1.2	package
trinityrnaseq	r20140717	package

Name

Version

Type

bowtie

0.12.7

package

bowtie2

2.2.5

package

eXpress

1.5.1

package

samtools

1.2

package

trinityrnaseq

r20140717

package