Galaxy |

Repository vcfcombine

Name: vcfcombine

Owner: devteam

Synopsis: Combine multiple VCF datasets

Detailed description:

Combines VCF files positionally, combining samples when sites and
alleles are identical. Any number of VCF files may be combined. The INFO field and
other columns are taken from one of the files which are combined when records in
multiple files match. Alleles must have identical ordering to be combined into one
record. If they do not, multiple records will be emitted.

Content homepage: https://github.com/ekg/vcflib

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcombine

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/vcfcombine/55ca04702702

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/vcfcombine

Type: unrestricted

Revision: 1:55ca04702702

This revision can be installed: True

Times cloned / installed: 3351

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
vcflib	8a5602bf07	package

Tool dependencies - repository tools require handling of these dependencies

Name

Version

Type

vcflib

8a5602bf07

package

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
VCFcombine: View tool metadata	Combine multiple VCF datasets	0.0.4	any

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Combine multiple VCF datasets

0.0.4

any