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Repository cnvkit_coverage
Name: cnvkit_coverage
Owner: iuc
Synopsis: Wrapper for CNVkit Coverage.
CNVkit is a Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data. It is designed for use with hybrid capture, including both whole-exome and custom target panels, and short-read sequencing platforms such as Illumina and Ion Torrent.
Content homepage: https://github.com/etal/cnvkit
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/cnvkit_coverage/5699301a3bd1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cnvkit_coverage
Type: unrestricted
Revision: 3:5699301a3bd1
This revision can be installed: True
Times cloned / installed: 141

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Calculate coverage in the given regions from BAM read depths 0.9.11+galaxy1 21.05

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA