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Repository deeptools_bam_coverage

Name: deeptools_bam_coverage

Owner: bgruening

Synopsis: Wrapper for the deepTools: bamCoverage

Detailed description:

deepTools address the challenge of visualizing the large amounts of data that
are now routinely generated from sequencing centers in a meaningful way. To do so,
deepTools contain useful routines to process the mapped reads data through removal of
duplicates and different filtering options to create coverage files in standard
bedGraph and bigWig file formats. deepTools allow the creation of normalized
coverage files or the comparison between two files (for example, treatment and control).

Finally, using such normalized and standardized files, multiple visualizations can be
created to identify enrichments with functional annotations of the genome.
For a gallery of images that can be produced and a description of the tools see http://f1000.com/posters/browse/summary/1094053

https://github.com/deeptools/deepTools
doi: 10.1093/nar/gku365
Wikipage: https://github.com/deeptools/deepTools/wiki

Repository-Maintainer: Björn Grüning

https://github.com/deeptools/deepTools

Development repository: https://github.com/deeptools/deepTools/tree/master/galaxy/wrapper/

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bgruening/deeptools_bam_coverage/5d11599b8a7d

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_bam_coverage

Type: unrestricted

Revision: 15:5d11599b8a7d

This revision can be installed: True

Times cloned / installed: 5084