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Repository featurecounts
Name: featurecounts
Owner: iuc
Synopsis: featureCounts counts the number of reads aligned to defined masked regions in a reference genome
Counts reads aligned to annotated genes in a reference genome from SAM or BAM files.
Content homepage: https://subread.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/featurecounts/5dbff3a5845a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/featurecounts
Type: unrestricted
Revision: 34:5dbff3a5845a
This revision can be installed: True
Times cloned / installed: 19591

Repository README files - may contain important installation or license information

Readme files

FeatureCounts wrapper for Galaxy

FeatureCounts as part of the SUBREAD package is "a highly efficient and accurate read summarization program".

Installation

This wrapper requires Galaxy 16.04 to be fully functional because of the following commits:

License

featureCounts:

GPL (>=3)

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Measure gene expression in RNA-Seq experiments from SAM or BAM files 2.0.8+galaxy0 20.09

Categories
RNA - Utilities for RNA
Transcriptomics - Tools for use in the study of Transcriptomics.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis