Repository fastreer_vcf2tree
Name: fastreer_vcf2tree
Owner: iuc
Synopsis: Wrapper for fastreeR module VCF2TREE.
Galaxy wrappers for fastreeR - a toolkit for phylogenetic trees and distance matrices from VCF and FASTA files. It includes the following tools that provide efficient methods for constructing distance matrices and phylogenetic trees from genetic data in VCF and FASTA formats:
  - VCF2DIST (Build cosine distance matrix from VCF(s)),
  - VCF2TREE (Build neighbor joining phylogenetic tree (dendrogram) from VCF(s)),
  - FASTA2DIST (Build D2S distance matrix from FASTA(s)),
  - DIST2TREE (Build neighbor joining phylogenetic tree from distance matrix).
Content homepage: https://github.com/gkanogiannis/fastreeR
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastreer
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/fastreer_vcf2tree/5ea9b32aaef6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/fastreer_vcf2tree
Type: unrestricted
Revision: 0:5ea9b32aaef6
This revision can be installed: True
Times cloned / installed: 0

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Newick tree from VCF files 2.1.2+galaxy0 24.0

Categories
Phylogenetics - Tools for performing phylogenetic analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA