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Repository bam2fastx
Name: bam2fastx
Owner: iuc
Synopsis: Convert PacBio Bam File to fasta or fastq file
Contains tools bam2fasta and bam2fastq that have identical interfaces and transform multiple PacBio BAM and/or DataSet XML files into a compressed FASTA or FASTQ file.
Content homepage: https://github.com/PacificBiosciences/pbtk
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/pbtk
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/bam2fastx/61a6b93ee6e1
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bam2fastx
Type: unrestricted
Revision: 0:61a6b93ee6e1
This revision can be installed: True
Times cloned / installed: 130

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
PacBio BAM to Fastx 3.1.1+galaxy0 22.01

Categories
Convert Formats - Tools for converting data formats
Fasta Manipulation - Tools for manipulating fasta data
Fastq Manipulation - Tools for manipulating fastq data