Galaxy |

Repository diamond

Name: diamond

Owner: bgruening

Synopsis: DIAMOND is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR.

Detailed description:

DIAMOND_ is a new alignment tool for aligning short DNA sequencing reads to a protein reference database such as NCBI-NR. On Illumina reads of length 100-150bp, in fast mode, DIAMOND is about 20,000 times faster than BLASTX, while reporting about 80-90% of all matches that BLASTX finds, with an e-value of at most 1e-5. In sensitive mode, DIAMOND ist about 2,500 times faster than BLASTX, finding more than 94% of all matches. http://ab.inf.uni-tuebingen.de/software/diamond/

Content homepage: https://github.com/bbuchfink/diamond

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/diamond

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/bgruening/diamond/62c9df8382c2

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/diamond

Type: unrestricted

Revision: 7:62c9df8382c2

This revision can be installed: True

Times cloned / installed: 2896

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Diamond View tool metadata	alignment tool for short sequences against a protein database	0.9.29.0	19.01
Diamond makedb View tool metadata	Build database from a FASTA file	0.9.29	19.01
Diamond View tool metadata	generate formatted output from DAA files	0.9.29	19.01