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Repository kraken_biom

Name: kraken_biom

Owner: iuc

Synopsis: Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/)

Detailed description:

The program takes as input, one or more files output from the kraken-report tool.
Each file is parsed and the counts for each OTU are recorded, along with database ID (e.g. NCBI), and lineage.

Content homepage: https://github.com/smdabdoub/kraken-biom

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/kraken-biom

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/kraken_biom/65eb9962d272

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/kraken_biom

Type: unrestricted

Revision: 1:65eb9962d272

This revision can be installed: False

Times cloned / installed: 224