Repository astral
Name: astral
Owner: padge
Synopsis: Tool for estimating an unrooted species tree given a set of unrooted gene trees
ASTRAL is a tool for estimating a species tree given a set of unrooted gene trees. ASTRAL is statistically consistent under multi-species coalescent model (and thus is useful for handling ILS). The optimization problem solved by ASTRAL seeks to find the tree that maximizes the number of induced quartet trees in gene trees that are shared by the species tree. The optimization problem is solved exactly for a constrained version of the problem that restricts the search space. An exact solution to the unconstrained version is also implemented and can run on small datasets (less than 18 taxa).
Content homepage: https://github.com/smirarab/ASTRAL
Development repository: https://github.com/smirarab/ASTRAL
Link to this repository: https://toolshed.g2.bx.psu.edu/view/padge/astral/66ebc4b19d6c
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/padge/astral
Type: unrestricted
Revision: 0:66ebc4b19d6c
This revision can be installed: True
Times cloned / installed: 120

Contents of this repository

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Name Description Version Minimum Galaxy Version
0.1.0 16.01

Categories
Phylogenetics - Tools for performing phylogenetic analysis