Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository samtools_slice_bam
Name: samtools_slice_bam
Owner: devteam
Synopsis: Slice BAM by provided regions
Accepts an input BAM file and an input BED file and creates an
output BAM file containing only those alignments that overlap the provided BED intervals.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_slice_bam
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_slice_bam/68ba55e96489
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam
Type: unrestricted
Revision: 0:68ba55e96489
This revision can be installed: True
Times cloned / installed: 9008
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
by provided regions 0.0.1 any

Categories
SAM - Tools for manipulating alignments in the SAM format