Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one. |
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cufflinks
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
transcript assembly and FPKM (RPKM) estimates for RNA-Seq data | 2.2.1.4 | 23.1 |