| A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time | 
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/iqtree
                
            | Name | Description | Version | Minimum Galaxy Version | 
|---|---|---|---|
| Phylogenomic / evolutionary tree construction from multiple sequences | 2.4.0+galaxy0 | 16.01 | |