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Repository lineagespot
Name: lineagespot
Owner: iuc
Synopsis: Identification of SARS-CoV-2 related metagenomic mutations based on a single (or a list of) variant(s) file(s)
Lineagespot is a framework written in R, and aims to identify SARS-CoV-2 related mutations based on a single
(or a list of) variant(s) file(s) (i.e., variant calling format). The method can facilitate the detection of
SARS-CoV-2 lineages in wastewater samples using next generation sequencing, and attempts to infer the potential
distribution of the SARS-CoV-2 lineages.
Content homepage: https://www.bioconductor.org/packages/release/bioc/html/lineagespot.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/lineagespot/6ddf5a9ce4a5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lineagespot
Type: unrestricted
Revision: 0:6ddf5a9ce4a5
This revision can be installed: True
Times cloned / installed: 62

Contents of this repository

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Name Description Version Minimum Galaxy Version
identifies SARS-CoV-2 lineages contributing to metagenomic samples from per-sample variant files 1.4.0+galaxy0 21.09

Categories
Metagenomics - Tools enabling the study of metagenomes
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis