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Repository blockclust
Name: blockclust
Owner: rnateam
Synopsis: BlockClust detects transcripts with similar processing patterns.
BlockClust detects transcripts with similar processing patterns. It proposes a novel way to encode expression profiles in compact discrete structures which can then be processed using fast graph-kernel techniques. BlockClust allows both clustering and classification of small non-coding RNAs.https://github.com/bgruening/galaxytools/tree/master/workflows/blockclust
Content homepage: https://github.com/bgruening/galaxytools/tree/master/workflows/blockclust
Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/blockclust
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/rnateam/blockclust/6ecd674b5b62
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/rnateam/blockclust
Type: unrestricted
Revision: 11:6ecd674b5b62
This revision can be installed: True
Times cloned / installed: 1948
Dependencies of this repository

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Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_cairo_1_12_14 revision cd2ed5717e38 owned by devteam (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_pixman_0_32_4 revision 93cd8e03820c owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision a65217367e4a owned by devteam (prior install required)
Repository package_fontconfig_2_11_1 revision d88d844df0cb owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_libpng_1_6_7 revision 3de32cd300a9 owned by devteam (prior install required)
Repository package_freetype_2_5_2 revision 1e86d1cf79a4 owned by iuc (prior install required)
Repository package_libxml2_2_9_1 revision 45b16a3ab504 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc
Repository package_mcl_12_135 revision 9f59d1a59999 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
R 3.0.3 package
blockclust 1.0 package
blockclust_rlibs 1.0 package
eden 1.1 package
mcl 12.135 package
samtools 0.1.19 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles 1.0.0 any

Categories
RNA - Utilities for RNA